PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1720570.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 359aa    MW: 41285.3 Da    PI: 6.9632
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1720570.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.21.9e-27242327186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW++ ev+aLi++r+++e+++r+  +k+  Wee+s++m+  g++rs+k+Ckekwen+nk+yk++k + kk    + +tcpyf++le
  Lj6g3v1720570.1 242 RWPDVEVQALITLRTSLEHKFRQLGSKGSIWEEISAAMHGMGYNRSAKKCKEKWENMNKYYKRTKGNGKKWPLLNLKTCPYFTELE 327
                      8****************************************************************999999999999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.584235299IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-6236299IPR009057Homeodomain-like
SuperFamilySSF466899.25E-5238301IPR009057Homeodomain-like
SMARTSM007172.8E-4239301IPR001005SANT/Myb domain
CDDcd122034.05E-28241306No hitNo description
PfamPF138377.4E-22241327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDLFTADQVS PFPDSGHLLY PSVLLSHRHN PQKLRPIRSI PSSSTPPYLD SSHNLRSPSP  60
ALETPLQTQD PAASGSGLNP FPHQVQEPDW FLDDDDDKDD GGDDDDNEDE NSSVSNKEPG  120
SRKRRKKTTR KLADFAQKLV RKVMEKQEQM HNELMVMIEK KERERIEREE AWRREEMIRI  180
KKDEEARAQE RSRNLAVISL IQNILGYEIQ IPQAAEGSSK SKEGEVEANV RRDFYNDLSK  240
KRWPDVEVQA LITLRTSLEH KFRQLGSKGS IWEEISAAMH GMGYNRSAKK CKEKWENMNK  300
YYKRTKGNGK KWPLLNLKTC PYFTELEILY KNGLLSQGNA LSNANDVPKV EEKECSETS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.199780.0floral bud| protoplast
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1720570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338735.11e-141trihelix transcription factor GTL1 isoform X1
TrEMBLV7BNQ31e-131V7BNQ3_PHAVU; Uncharacterized protein
STRINGXP_007147613.11e-132(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-36Trihelix family protein