PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1983320.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 189aa    MW: 21647.4 Da    PI: 5.8891
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1983320.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1102.6e-34121311128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      lp+GfrF+Ptd+elv++yLk+k++g++ +   + i+ ++++kvePwd+p    +k++e ewyfFs+ ++        nra ++g+Wk  g+d++
  Lj6g3v1983320.1  12 LPVGFRFKPTDQELVDHYLKHKLQGDDSDSLVAkIPVLNLCKVEPWDIPaFsVIKSNEPEWYFFSPLQS--------NRANRHGFWKYVGSDRN 97 
                      79*************************7776656***************5347777888*******855........566668*********** PP

              NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++ ++ ++g++ktLvf +     g +tdWv+hey++
  Lj6g3v1983320.1  98 IKTTrTNIVIGTRKTLVFCR----GGGETDWVIHEYHA 131
                      *998566679*********4....46689*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-398148IPR003441NAC domain
PROSITE profilePS5100538.17712150IPR003441NAC domain
PfamPF023651.8E-2413130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGGGTFQMLD LLPVGFRFKP TDQELVDHYL KHKLQGDDSD SLVAKIPVLN LCKVEPWDIP  60
AFSVIKSNEP EWYFFSPLQS NRANRHGFWK YVGSDRNIKT TRTNIVIGTR KTLVFCRGGG  120
ETDWVIHEYH AAATFDQAQR TFVLCHLMEG PTKKAALIRE EREFRRLESL DMASDHESED  180
VESEGNTID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-211213015139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1983320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097703e-94AP009770.1 Lotus japonicus genomic DNA, clone: LjT15D16, TM1935, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027334668.11e-54NAC domain-containing protein 105-like
TrEMBLA0A0R0FWD14e-51A0A0R0FWD1_SOYBN; Uncharacterized protein
STRINGGLYMA16G01911.12e-50(Glycine max)
STRINGXP_007135341.13e-50(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-42NAC transcription factor-like 9