PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1984370.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 357aa    MW: 39092.7 Da    PI: 7.1655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1984370.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-183181256
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  Lj6g3v1984370.1 31 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDNAARALRGA 81
                     689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-353194IPR001471AP2/ERF domain
CDDcd000181.37E-313188No hitNo description
Gene3DG3DSA:3.30.730.107.1E-293188IPR001471AP2/ERF domain
PROSITE profilePS5103220.4953188IPR001471AP2/ERF domain
PfamPF008471.8E-123180IPR001471AP2/ERF domain
PRINTSPR003671.2E-73243IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-203288IPR016177DNA-binding domain
PRINTSPR003671.2E-75470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MPQFDISKKQ KMGAPTCGIR SRKKSSRGHH RFVGVRQRPS GRWVAEIKDS LQKVRLWLGT  60
FDTAEDAARA YDNAARALRG ANARTNFELP ESETTGGAAK RGSGSNFMPT EPFSFEDANE  120
SSADADGLLG ALKAKLLDGT KEGKFQFPFP ATNCAGHAVQ PGMVNPISTQ KCYGKKEKEK  180
EKEKELSSTT SLYHMNGTSN TLPSLLSPSS NTSTKSVVLP NHDHMEGVVA SSSGINYQQL  240
CQTPPLTSMT WSNDMAYELP WPMQMNQVTT DTAANFPWPL YGVMEPSVDM TCTDQGPSHS  300
NKSGQTNMMS MQLPQVGGGS EGFWSMEQQQ FVQSENNKWF GSSGSWDPLF YVPSELG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1429871271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1984370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338163.11e-149ethylene-responsive transcription factor ERN2-like
TrEMBLA0A2K3NNH11e-135A0A2K3NNH1_TRIPR; Ap2/erf domain-containing transcription factor
STRINGXP_007148016.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-13related to AP2 11