PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2006220.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 258aa    MW: 28747.2 Da    PI: 4.604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2006220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20118168255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrd s+   + +r++lg+f+taeeAa a+++a+++++g
  Lj6g3v2006220.1 118 HYRGVRRRP-WGKYAAEIRDSSK---KgARVWLGTFDTAEEAALAYDKAALRIRG 168
                      8********.**********543...34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.47E-32117176No hitNo description
Gene3DG3DSA:3.30.730.101.6E-32117177IPR001471AP2/ERF domain
SMARTSM003807.3E-39118182IPR001471AP2/ERF domain
PROSITE profilePS5103223.947118176IPR001471AP2/ERF domain
PfamPF008474.8E-15118168IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-24118178IPR016177DNA-binding domain
PRINTSPR003672.3E-11119130IPR001471AP2/ERF domain
PRINTSPR003672.3E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDIQSNNTNC NASSDGILEN VWAQIRAGDA AESSNSWEEL PNLDGRDGSM EILQRLPSLG  60
RWISMGAEFW EEVLDGIQVL PSASNIIDDS GKKNLEVANT SNLKVEEKVR TEKVVEKHYR  120
GVRRRPWGKY AAEIRDSSKK GARVWLGTFD TAEEAALAYD KAALRIRGPK AHLNFPLETV  180
IDLTTCASRA CEIYCTCTGK QEKRKRGSGD GEEFDDIMNE QPAAKKMAGW ENMFGNELDV  240
LVFQDLGSDY LESLLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-29117177161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2006220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105450.0AP010545.1 Lotus japonicus genomic DNA, clone: LjT14H03, TM1489, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541718.11e-118ethylene-responsive transcription factor ERF091
RefseqXP_025981540.11e-118ethylene-responsive transcription factor ERF091-like
RefseqXP_028186689.11e-118ethylene-responsive transcription factor ERF091-like
RefseqXP_028203559.11e-118ethylene-responsive transcription factor ERF091-like
TrEMBLA0A0B2QG581e-117A0A0B2QG58_GLYSO; Ethylene-responsive transcription factor ERF091
TrEMBLA0A445I9251e-117A0A445I925_GLYSO; Ethylene-responsive transcription factor ERF091
TrEMBLI1M1X71e-117I1M1X7_SOYBN; Uncharacterized protein
TrEMBLI1MEP01e-117I1MEP0_SOYBN; Uncharacterized protein
STRINGGLYMA13G30710.11e-118(Glycine max)
STRINGGLYMA15G08580.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-34ERF family protein