PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v2006500.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 231aa MW: 26133.6 Da PI: 8.7905

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v2006500.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.3	1.8e-33	56	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 lp+G++F+P+d+e++ e+L++kv ++ ++l+ +i++++ i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + Lj6g3v2006500.1 56 LPAGVKFDPNDQEIL-EHLEAKVVSDVCKLHPlidqFIPTLQgdngICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHtddegsE 147 799*********9.99*99995543333332433322334******.566677888**************7444565557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+++g kk++v+y gr++k+ekt+Wvmh+y+l Lj6g3v2006500.1 148 TRWHKTGKTRAVFAGGGAVKGFKKIMVLYtnFGRQRKPEKTNWVMHQYHL 197 88***********************5547999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-37	51	216	IPR003441	NAC domain
PROSITE profile	PS51005	33.478	56	216	IPR003441	NAC domain
Pfam	PF02365	6.7E-15	57	197	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MKWCNDSDKE KGNEYLITPT NTPKAIINLT EGIHTIKCPS CSHNMEVRDQ GGIHGLPAGV 60 KFDPNDQEIL EHLEAKVVSD VCKLHPLIDQ FIPTLQGDNG ICYTHPEKLP GVSKDGQVRH 120 FFHRPSKAYT TGTRKRRKVH TDDEGSETRW HKTGKTRAVF AGGGAVKGFK KIMVLYTNFG 180 RQRKPEKTNW VMHQYHLGSN EEEQDGELVV SKVFYQTQPR QCGTSIIRDP P

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269\|PubMed:18952777}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v2006500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009668	0.0	AP009668.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT04E21, TM0336, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027366168.1	1e-140	NAC domain-containing protein 73-like
Refseq	XP_027366178.1	1e-140	NAC domain-containing protein 73-like
Swissprot	O49459	1e-111	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A371EGC4	1e-138	A0A371EGC4_MUCPR; NAC domain-containing protein 73
STRING	XP_007148112.1	1e-133	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-105	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]