PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2007160.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 167aa    MW: 18087.6 Da    PI: 10.1014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2007160.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-201363256
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Lj6g3v2007160.1 13 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 63
                     69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.5E-351376IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-221370IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-321370IPR001471AP2/ERF domain
PfamPF008472.8E-131362IPR001471AP2/ERF domain
PROSITE profilePS5103222.7211370IPR001471AP2/ERF domain
CDDcd000182.59E-301372No hitNo description
PRINTSPR003674.7E-111425IPR001471AP2/ERF domain
PRINTSPR003674.7E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MASSSSSASR EGHYRGVRKR PWGRYAAEIR DPWKKTRVWL GTFDTPEEAA LAYDGAARSL  60
RGAKAKTNFP PAPLAAGLCL DLNAPSSDLH HHRWPSVPSR GLALSEFLHT GVLKDINPPQ  120
PPPVTVAVSA PYVTVAQVAE PSPTASFLGL IRRGIPIDLN EPPPLWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211370563ATERF1
3gcc_A1e-211370563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.80620.0pod| root
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2007160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064110.0AP006411.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT29C05, TM0301b, complete sequence.
GenBankBT1488970.0BT148897.1 Lotus japonicus clone JCVI-FLLj-13B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593626.12e-86ethylene-responsive transcription factor 12
SwissprotQ94ID62e-45ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLI3T8491e-116I3T849_LOTJA; Uncharacterized protein
STRINGAES638771e-85(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-46ERF domain protein 12