PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2080300.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 882aa    MW: 97202.5 Da    PI: 7.5982
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2080300.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-18337436198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e+
  Lj6g3v2080300.3 337 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEG 428
                      99**************************555566778***************9989999999***9.********************766.677 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  Lj6g3v2080300.3 429 RLVMGFRK 436
                      67777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-31329444IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-20334437IPR015300DNA-binding pseudobarrel domain
CDDcd100178.20E-22335436No hitNo description
PfamPF023621.4E-15337436IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138337438IPR003340B3 DNA binding domain
SMARTSM010194.4E-21337438IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286563613IPR011124Zinc finger, CW-type
PfamPF074969.6E-12568610IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MAASPSSSSS KLCFNSLCKE FKSERPKKAW RLRTGDLAEL CDRCGSAFEE GRFCEIFHSN  60
TSGWRNCETC GKRIHCGCIV SSHAYVLLDP GGIECFACAR KSIILPSNVP WPQSFPVHNR  120
LPERFRDLSA KSWNQLAGSG PVPWKQAPSL FNSASSSDLV PEVPSVVDLS NSFDKIYGNE  180
RLPAPSLEKK NEDFPGISVN WNVKLGPREM MLMNGMRNED KSSSCLSMCS QPPSMKEDSS  240
PQPFGLSIPY SSPNERNGQI GVTGSHPQQT PPPPGKQFNG SMHLSLDSSG DAQVRNGRPR  300
ADARGRNQLL PRYWPRCTDL ELQQISIDSN SIITPLFQKT LSASDAGRIG RLVLPKKCAE  360
TYFPPISQPE GLPLKILDAK GKEWIFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT  420
FSRLEPEGRL VMGFRKASSA MPSDQDNDTN KNGNGFSAHG EVELADPNSW SKVDKSGYIA  480
KEALGSKSLK KRKTSILGSK SKRLKIESED MIELKITWQE AQGLLRPPPN LIPSIVVIEG  540
FEFEEYEDAP VLGKPTIFTN DNDGEKIQWA QCEDCMKWRK LPANALLPSK WTCSDNAYDI  600
ARSSCSAPQE LTAEQLENLL PSCNSVSKKM KATKLDPDNA EALEGLDTLA NLAILGEGEA  660
LPSSGQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF RTLMLRREKK  720
QSEKEAETAR KKQQQQQHPQ PLPTSEILLY DDSLPCNTGD SSSPNQNKEG NDGSDDDPNR  780
IKSSVSPFKG QIDLNIQPER EEELSPGSDS GGMMKLLHDA NDRYLPKHQT VLNSGTGDSS  840
GSQSQQIGDG VREEKHSNGV VAHGSSSHST DKEHTQSLPM NV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-623154402127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1486492KSLKKRK
2490504KRKTSILGSKSKRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.36068e-96pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2080300.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594624.10.0B3 domain-containing protein Os07g0563300
RefseqXP_028187625.10.0B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A445I9N90.0A0A445I9N9_GLYSO; B3 domain-containing protein isoform A
TrEMBLI1M2C30.0I1M2C3_SOYBN; Uncharacterized protein
STRINGGLYMA13G31970.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-160HSI2-like 1