PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2274290.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 185aa    MW: 21547.4 Da    PI: 7.0587
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2274290.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.21e-29161431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      l pG++F+Ptde lv++yLk++v g++l++ e+i+++d++++ePw Lp    k  +++  fF++   +   ++   r++ sg W+at k k+v+
  Lj6g3v2274290.1  16 LLPGYKFDPTDEVLVDFYLKRRVFGQPLPF-EIIPDFDVFQIEPWGLPgGDGKIFNQRKCFFHNIGGRDL-ESLDIRVAGSGEWRATKKGKNVH 107
                      579***************************.99***************5444444456677777766654.57899999********9999998 PP

              NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + ++e+vg k+tL f++ + + +++t+W+mhe+rl
  Lj6g3v2274290.1 108 IHqNNEVVGKKNTLHFWEVQGSCARRTEWMMHEFRL 143
                      7758888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3413162IPR003441NAC domain
PROSITE profilePS5100534.91816163IPR003441NAC domain
PfamPF023653.1E-1618143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEDLMTYEDD DGIVRLLPGY KFDPTDEVLV DFYLKRRVFG QPLPFEIIPD FDVFQIEPWG  60
LPGGDGKIFN QRKCFFHNIG GRDLESLDIR VAGSGEWRAT KKGKNVHIHQ NNEVVGKKNT  120
LHFWEVQGSC ARRTEWMMHE FRLASIANPS KVTKWAVYRI FQNKDLKKVT NSNKYNQDSY  180
NDVEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-2091438140Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2274290.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352865.11e-57NAC domain-containing protein 83-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-32NAC domain containing protein 83