PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000009
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 270aa    MW: 30553.5 Da    PI: 7.2937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679213PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-1280133155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++ +hn+ Er RR+r+N+ ++ +r+llP +   ++kK+s   ++ +A +YI +Lq
  Lsa000009  80 KKLNHNASERHRRKRVNDLYAFIRSLLPIS-TDQKKKVSIPGTVSRALKYIPELQ 133
                6789*************************6.377778***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1376146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.89479132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-980137No hitNo description
PfamPF000107.1E-1080133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1080137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-785138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQALSPLFSS NFAWPSEDLI PNHFQLDGND LSIDVEANSY KSFLGFHTYE DIQHDFSNEN  60
SNSSGGLVND DYANPLMVVK KLNHNASERH RRKRVNDLYA FIRSLLPIST DQKKKVSIPG  120
TVSRALKYIP ELQKEVETLI RKKEKLSSYS SSKAYLTEEG MKNKMGKDAK IETNSSFVSS  180
VRVLGAKEAV IQLISSKDHM HKRKEIGFLS TVLKYLEEEE DGFVLLNSTT FKSLGEGMLF  240
STLHIQVQGD NNIDAGRLKE KLCSFYQQSD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023730629.10.0transcription factor ORG2-like
TrEMBLA0A2J6KMQ70.0A0A2J6KMQ7_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-39bHLH family protein