PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa000100

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WOX

Protein Properties

Length: 277aa MW: 30356.9 Da PI: 6.6315

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58681939	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.6	6.5e-16	27	87	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ Lsa000100 27 RSRWTPKPEQILILESIFNSgMVNPPKEETVKIRKLLekfgSVGDANVFYWFQNRRSRSRR 87 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.6	1.6e-34	26	89	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+kee+ +i++ Le++G ++d+NVfyWFQNr++R+r++q Lsa000100 26 VRSRWTPKPEQILILESIFNSGMVNPPKEETVKIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 89 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.07E-13	23	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.629	23	88	IPR001356	Homeobox domain
SMART	SM00389	1.8E-6	25	92	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-13	27	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.9E-9	27	92	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEDQAQTQVP TPSSPRSQCL ERNEPVRSRW TPKPEQILIL ESIFNSGMVN PPKEETVKIR 60 KLLEKFGSVG DANVFYWFQN RRSRSRRRQR QIQASLVSSG SLEQHQQQQL PMLTRCVSSG 120 GGTGGGAIEY QDTAYTTPTP GFHIQQPSFF SLAVSSSSSS SPSSSSSSRL GGSDEIYSLS 180 GQSASFHEQN TSMPSSFQHL DTSKVHYDFG LGVMITVFIN GVPTEVESGP VNMKAMFGED 240 NLMLVHSSGV ALPLDEFGVL VPGLQHGESY FLVSRSI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733207.1	0.0	WUSCHEL-related homeobox 11-like
Swissprot	Q6X7J3	5e-56	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A2J6KGX1	1e-172	A0A2J6KGX1_LACSA; Uncharacterized protein
STRING	EOY10442	3e-73	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	8e-34	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]