PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000323
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 297aa    MW: 33677.8 Da    PI: 7.7447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678336PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-08182229455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+++Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Lsa000323 182 SHSIAERVRRGKINERLRCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 229
                8*************************8....3569999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-16176243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.29E-10176233No hitNo description
PROSITE profilePS5088815.224178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-8184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
HPERQPSWAN LIPALYYKKD SYMEGFTSNF HSRKPSYSFI DIDQSMEFLN QFSVQYDNPN  60
LNSQSLMGFS NDNFLYQQVL PPFDHQFVQS FQPVSQYEKK NIMVIHEPVA TGPTISGKRK  120
SMDVSASSSG NSSSHPVPEN EINNEKKYQN SGKGKRVKAS ANEEAPKEVV HVRARRGQAT  180
DSHSIAERVR RGKINERLRC LQDIVPGCYK SMGMAVMLDE IINYVQSLQN QVEFLSMKLT  240
EASIFHSFDS SDSKQMDILQ MGNATQGVKM KRLEERGEIG PVDLSFGSYP SLPYHTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744569.10.0transcription factor bHLH75-like
TrEMBLA0A2J6JS220.0A0A2J6JS22_LACSA; Uncharacterized protein
STRINGEOY210451e-75(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.17e-52BR enhanced expression 1