PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000324
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family SRS
Protein Properties Length: 260aa    MW: 29050.6 Da    PI: 7.8355
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677844PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702122.84.1e-38159228372
     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaas 72 
                 g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql++++++++++++++++
  Lsa000324 159 GGGMNCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSSLTQQQQQQQQHHHN 228
                5789****************************************************99988877654443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.9E-36161231IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-27163205IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSGLFSLGGG FGIGKDEEEQ QHDHHNQEQE DSIITPNSLY LFKNEDIYSK GFELWQQYYQ  60
LHQHRQQNHH QQPPHYDLSV GGGCTGRRRS STASGGVDDL CLNSNSSNNN NNNHHHLYAS  120
SWNFVDRSSG SGDETKVMRQ TGYSIGGGDH GGGGSGSGGG GMNCQDCGNQ AKKDCQHMRC  180
RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QLSSLTQQQQ QQQQHHHNLG NQQLSLMMRG  240
GGIDQNPKRL REDHQLMTTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140154TGYSIGGGDHGGGGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767166.10.0protein SHI RELATED SEQUENCE 5-like
TrEMBLA0A2J6L6M30.0A0A2J6L6M3_LACSA; Uncharacterized protein
STRINGXP_009599252.11e-46(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.16e-28SHI-related sequence 5