PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa000363

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 131aa MW: 15018.8 Da PI: 8.6472

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58668720	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ + H++ H Lsa000363 22 FSCSYCRRKFYSPQAFGGHQNAH 44 89**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.27E-6	18	49	No hit	No description
PROSITE profile	PS50157	10.18	22	49	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	24	44	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MDLNSSSSSL LSSLHIADQR VFSCSYCRRK FYSPQAFGGH QNAHKLERTL AKKSRELCSA 60 ARHQQSEWNQ MSSSRFDCND LTHVGKVKPS IVMGLEHQEH LVQFGSNERR REVDYGYKGE 120 TVDQLDLSLR L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024959033.1	4e-45	zinc finger protein 2-like
TrEMBL	A0A2J6KK36	9e-93	A0A2J6KK36_LACSA; Uncharacterized protein
STRING	VIT_11s0052g01120.t01	2e-23	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	2e-20	zinc finger protein 2