PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000484
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 218aa    MW: 24327.1 Da    PI: 8.8467
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58671518PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-24238PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.5e-30129189259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dDgy+WrKYGqK++ g++fprsYYrCt++   +C+++k+v+r++edp+v+eitY+g+H ++
  Lsa000484 129 DDGYSWRKYGQKDILGAKFPRSYYRCTYRyvhNCMARKQVQRTDEDPTVFEITYRGKHSCN 189
                8***************************9999**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28125189IPR003657WRKY domain
SMARTSM007741.7E-39128190IPR003657WRKY domain
SuperFamilySSF1182906.8E-26128189IPR003657WRKY domain
PROSITE profilePS5081122.687129191IPR003657WRKY domain
PfamPF031062.6E-27129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MENVYIINEL TQGMELARQL KAILSSNCSP ESKHNLIQGI IASYNRALLI INSAQSELPA  60
LAAQPVSVSV LSQPESPVSI DGSPQSGDFN QGFDNFQDQK IVSKKRKAML TWKNQIRIST  120
DNGLEGNSDD GYSWRKYGQK DILGAKFPRS YYRCTYRYVH NCMARKQVQR TDEDPTVFEI  180
TYRGKHSCNN SATTATTAAQ SVVPPQSPEN HQPPPPKX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-201271861574Disease resistance protein RRS1
5w3x_D3e-201271861574Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106QKIVSKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742692.11e-162probable WRKY transcription factor 53
TrEMBLA0A2J6JVZ51e-150A0A2J6JVZ5_LACSA; Uncharacterized protein
STRINGXP_010055851.12e-72(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-54WRKY family protein