PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000502
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 487aa    MW: 54807.2 Da    PI: 8.7555
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691170PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.6e-19137225399
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                k + +s v++  ++ lp +f+++++ k  e++t +lede+g++ evk+i  k++    +++GWk+Fv a++L egD++vF+l++   f+++v ++++
  Lsa000502 137 KLMGRSQVTQGFWMGLPTPFCRSFMPK--EETTFVLEDENGEKCEVKYIAYKNG----ISAGWKSFVVAHDLTEGDVLVFHLID--AFKFKVYIIKA 225
                67778999999************9855..5569***************666666....99*********************997..67778888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-23128226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-20128226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-24133224No hitNo description
SMARTSM010192.4E-19135226IPR003340B3 DNA binding domain
PROSITE profilePS5086311.871135226IPR003340B3 DNA binding domain
PfamPF023622.3E-16136225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAAPVAEEDS LAVENSNPPL AKNYLGSPNS AEDYNIFSQL TKTFNTQHND PDAPSLSKRR  60
KSKPTRFEVS PTEVQTERPP PKINIPVSKT STPSLSLKKV KSSSTKSSKS PTPTSPAMIL  120
ATEFQSSLGT EFPSCVKLMG RSQVTQGFWM GLPTPFCRSF MPKEETTFVL EDENGEKCEV  180
KYIAYKNGIS AGWKSFVVAH DLTEGDVLVF HLIDAFKFKV YIIKASESNE VDGALSLLNL  240
EAQNDENPPV TPSPKPKKRK HPKTLSLTMV KEKHKKSTPL LVKAIEILEH SGTNKEDIGS  300
EVPEPSTTPF QDLKSFEHFR IKINGQCINS ELSEEVKLGY YKLCIHKKQF LHDGVHKNLY  360
HKLVAGMIGE TVNIAKEIKN CKLMISKEEL EAWDNTLKSF EILGMKVGFL RDKIRTLVRL  420
VFESEFGVDL KRYVEAKKNE KLVEDEIIKV KAKLLELKIK AKGLLGCLKD KVEKYMIEFQ  480
DEVDVPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767915.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A2J6L4Z00.0A0A2J6L4Z0_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-35B3 family protein