PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000615
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 298aa    MW: 33192.1 Da    PI: 9.9381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-43028PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07238281243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W+  Ed  l++a k ++++   +W++I + ++ gR+   c  r
        Lsa000615 238 GSWSSAEDIALLNALKAFPKDsalRWEKITAAVP-GRSKAACMKR 281
                      79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.6148201IPR001005SANT/Myb domain
SuperFamilySSF466896.63E-5150189IPR009057Homeodomain-like
PROSITE profilePS500904.391152185IPR017877Myb-like domain
SuperFamilySSF466892.03E-9235285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-7235290IPR009057Homeodomain-like
SMARTSM007171.5E-6236288IPR001005SANT/Myb domain
PfamPF002494.9E-6238281IPR001005SANT/Myb domain
PROSITE profilePS500906.934238281IPR017877Myb-like domain
CDDcd001672.58E-5239281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEFFDEESRP RFVLQSRSTP KTTPKSEKLD DLHKPALFVS LSLSALLLTL SLFYFQSDPL  60
QSIFIWFSLS LLVGPFAPPS LTAGDIRVGL GPAIQPQSPR QTPEPEPLKR SRFKTKKPDQ  120
DFISVPAVVV NETPKPSNKS DSNVIVVEDK EWSEGDLELL KKQMVKNPVG MPGRWEAVAE  180
VFSGRHKVES VVKMAKSMGE RKIGDSDSFS KFLKDRKAVD KRVDEVIENE REQVSNGGSW  240
SSAEDIALLN ALKAFPKDSA LRWEKITAAV PGRSKAACMK RVADLKKDFR SSKVSSEA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769050.10.0dnaJ homolog subfamily C member 2
RefseqXP_023769051.10.0dnaJ homolog subfamily C member 2
SwissprotQ9ASQ28e-75MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A2J6L2E70.0A0A2J6L2E7_LACSA; Uncharacterized protein
STRINGXP_008465927.13e-98(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-72MYB_related family protein