PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa000616

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 366aa MW: 38694.1 Da PI: 6.1789

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685317	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.3	1.6e-35	91	178	4	94
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg...kaaks 93 ++ ++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + ++a+s Lsa000616 91 PRRANKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVnvngtlkI-------------PttpSNAAS 177 57889*********************************************************8888844421111111.............111122222 PP TCP 94 a 94 + Lsa000616 178 D 178 2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.3E-29	94	166	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.621	95	149	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MALIDNRSVV ESEDEEEDGG NTAKILSASD PLLGDPAVYT ITAVPHRHDS QPPIEVNLMK 60 EEPPENDLDG SLPVAIVPMP TSNKQITVAT PRRANKDRHT KVEGRGRRIR MPAACAARIF 120 QLTRELGHKS DGETIRWLLE HAEPAIIEAT GTGTVPAIAV NVNGTLKIPT TPSNAASDGE 180 GGGKRRKRAC NSEFYDVNDS ASSNFAPVAP IAPQSLVPVW TMGAAPPTGG IHGGAFFMFP 240 QSGATAIGPS SANQTQFWAI PAGATPVFNV AARPISSYVS AIQPGEHSGG GEIQTPSRSV 300 SYNSRNENKS GKVSTTMAPS SSSVSTTTTT AQMLRDFSLE IYDKRELQFM AGSSSTDEKP 360 SSKPSS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MALIDNRSVV ESEDEEEDGG NTAKILSASD PLLGDPAVYT ITAVPHRHDS QPPIEVNLMK  60
EEPPENDLDG SLPVAIVPMP TSNKQITVAT PRRANKDRHT KVEGRGRRIR MPAACAARIF  120
QLTRELGHKS DGETIRWLLE HAEPAIIEAT GTGTVPAIAV NVNGTLKIPT TPSNAASDGE  180
GGGKRRKRAC NSEFYDVNDS ASSNFAPVAP IAPQSLVPVW TMGAAPPTGG IHGGAFFMFP  240
QSGATAIGPS SANQTQFWAI PAGATPVFNV AARPISSYVS AIQPGEHSGG GEIQTPSRSV  300
SYNSRNENKS GKVSTTMAPS SSSVSTTTTT AQMLRDFSLE IYDKRELQFM AGSSSTDEKP  360
SSKPSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023753343.1	0.0	transcription factor TCP19-like
Swissprot	Q9LT89	7e-71	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A2J6M1A7	0.0	A0A2J6M1A7_LACSA; Uncharacterized protein
STRING	XP_009623553.1	1e-108	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-72	TCP family protein