PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000621
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-YC
Protein Properties Length: 134aa    MW: 15061.3 Da    PI: 10.3938
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58671949PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.31.5e-177931297
      NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                +t+  + ++P  r+k+i+k d+d+++i a+a  l+s+a elf+  l+ +s   a e+kr+t+k   +  av+r + + dfl+d  p
  Lsa000621  7 IHTETVQSSIPTGRVKRIMKLDKDINKINADALFLISNATELFVKFLAEKSSEVAVEKKRKTIKLEHLRIAVKRHQpTADFLLDSLP 93
               567778999***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.14E-191198IPR009072Histone-fold
PfamPF008083.3E-211578IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-211793IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAEGEEIHTE TVQSSIPTGR VKRIMKLDKD INKINADALF LISNATELFV KFLAEKSSEV  60
AVEKKRKTIK LEHLRIAVKR HQPTADFLLD SLPLPPPPAA AQTSSKPDRP HKRSDNNPVP  120
VGTRRIDSFF QKEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736950.16e-93putative transcription factor C16C4.22
TrEMBLA0A2J6K8J31e-91A0A2J6K8J3_LACSA; Uncharacterized protein
STRINGSolyc05g015330.1.12e-48(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-34nuclear factor Y, subunit C13