PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000624
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 326aa    MW: 37165.3 Da    PI: 5.9159
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679265PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT eEde l++++++ G g+W++ ++  g+ R++k+c++rw +yl
        Lsa000624 14 RGRWTSEEDETLIKYIQLNGEGSWRSLPKNAGLSRCGKSCRLRWINYL 61
                     8*********************************************97 PP
2Myb_DNA-binding52.11.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+e +v+++  lG++ W+ Ia++++ gRt++++k++w+++l
        Lsa000624  67 RGNITAEEEEVIVKLHGSLGNR-WSVIASHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129418.437961IPR017930Myb domain
SuperFamilySSF466891.65E-2811108IPR009057Homeodomain-like
SMARTSM007172.4E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-151461IPR001005SANT/Myb domain
CDDcd001679.05E-91661No hitNo description
PROSITE profilePS5129424.23362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2465116IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002494.8E-1467112IPR001005SANT/Myb domain
CDDcd001674.09E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRTPCCEKE GIKRGRWTSE EDETLIKYIQ LNGEGSWRSL PKNAGLSRCG KSCRLRWINY  60
LRGDLKRGNI TAEEEEVIVK LHGSLGNRWS VIASHLPGRT DNEIKNYWNS HLSRKVYRFF  120
RGKNDSAFKS NNITDVVQAN QKIGRVSRCV AKKYNKNRVA SNIKSPIKPT SNKLAQQTVN  180
KDKTDYHEIS SYSVPTTKNV TEDRVRGIEW SFQEERENQN LGPNEFCFQY DEMMDISRFL  240
GSGAVDSCGV LSIHDQEEAG KILADMSVEN AKKNETEDEF LSWNSSETVG LYSNGDHMEL  300
GCAGDDGDEM LLWLWDDEEE PEPHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-241411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-241411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-251211625128MYB TRANSFORMING PROTEIN
1mse_C5e-25141164105C-Myb DNA-Binding Domain
1msf_C5e-25141164105C-Myb DNA-Binding Domain
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765583.10.0transcription factor MYB13
TrEMBLA0A2J6L9Z80.0A0A2J6L9Z8_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-73myb domain protein 12