PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000631
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 675aa    MW: 74601.9 Da    PI: 7.6709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58694315PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-18318417198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+kvl+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv+++
  Lsa000631 318 FEKVLSASDAGRIGRLVLPKKCAEAYlpPISQPEGYPLVVQDLKGKDWVLQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGKLVMGF 415
                99**************************666678889***************9989999999***9.********************766.777777777 PP

                E- CS
         B3  97 fr 98 
                ++
  Lsa000631 416 RK 417
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-29313421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-20315418IPR015300DNA-binding pseudobarrel domain
CDDcd100173.66E-22316417No hitNo description
PfamPF023622.3E-15318417IPR003340B3 DNA binding domain
SMARTSM010191.0E-20318419IPR003340B3 DNA binding domain
PROSITE profilePS5086311.406318419IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MASSSGSTKL CFNSTCKEAL EVPRQGWLCR TGDFADLCDR CSSAFKDGKF CNTYHMNASG  60
WRCCESCGKQ IHCGCIVSFH MFILLDAGGI ECINCAKSEY ILTPNPTWPS SPHFLTGPAE  120
RIRDISSKNW RSIAGSGPVP WKQAPYLFNS SKLQPDFLSN IDKPLSREQL TSCSLTRSII  180
HDPSERLVND SWQMTGDRAK ATGVQYDGKH NLFQSFFSNE LATPVSSLPA TFMAQDQKSE  240
KGKASGQFCP PPSVGKCCSS SNTNSPPGTS LESQTYSGKG QGEKRGRHQL IPRYWPRLTD  300
QELQQISGGS NAKITPLFEK VLSASDAGRI GRLVLPKKCA EAYLPPISQP EGYPLVVQDL  360
KGKDWVLQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRLEPEGK LVMGFRKASP  420
SSPSYHVTEV STHEETSKGS FGNKSRNPDG TWAEVDKIAK RKKGGKMCSN NKHVKPNDEE  480
IVRVNVTLEQ VQGLLRPPLT NSSTIVVIEG VEFEDFQEEP IIGSPTNFST ISHASCNKNE  540
SENQGLDALA NLAIQDGKAT KSPSGTNHKS VSVHHGDEKH LEKEVGNVGQ NPNELMYADV  600
IRYNNNQNQK MGPSQSIEKV STSQSFKSQN IDLNIQPERE EECSPVSDMG IMMLVQESTH  660
RYIRQQKLSF NDVNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C6e-632964191124B3 domain-containing transcription repressor VAL1
5yzz_C6e-632964191124B3 domain-containing transcription repressor VAL1
5z00_C6e-632964191124B3 domain-containing transcription repressor VAL1
5z00_G6e-632964191124B3 domain-containing transcription repressor VAL1
5z00_K6e-632964191124B3 domain-containing transcription repressor VAL1
5z00_M6e-632964191124B3 domain-containing transcription repressor VAL1
6j9a_A7e-632964192125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758298.10.0B3 domain-containing protein Os07g0563300
TrEMBLA0A2J6MGX40.0A0A2J6MGX4_LACSA; Uncharacterized protein
STRINGXP_006467887.10.0(Citrus sinensis)
STRINGXP_006449227.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-111HSI2-like 1