PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa000661

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 239aa MW: 27043.7 Da PI: 10.3672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58675412	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00031	87	135	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd +N+ f eL + l + ++ + K++ L+ +++ +++L Lsa000661 87 KIHKAEREKLKRDYMNDLFLELTKALEPT----NQNNGKSSALTDTIRILRDL 135 667889********************997....67777888888888777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.66E-10	84	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.407	85	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-6	85	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:1.20.5.1000	4.6E-4	144	176	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
XHRRIPATRL RVPSSINNTP FIFKHTIQLF YSILSTAHLQ FAEVITSTLR LNLSRSAPMD 60 ENVDTTKKKS IGRSSLSKKN GAKVHRKIHK AEREKLKRDY MNDLFLELTK ALEPTNQNNG 120 KSSALTDTIR ILRDLIAQVE SLKKENSVLL AESQYVAIEK NELKEENVAM EAQIKRLQSQ 180 IDQAAGQVVG PVFVVPIQND PKLYTEPKIG SNVSKPHARY PLPSDSWPFN ILSEQGRTD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758363.1	1e-130	transcription factor bHLH47-like
Refseq	XP_023758364.1	1e-130	transcription factor bHLH47-like
TrEMBL	A0A2J6LQI2	1e-129	A0A2J6LQI2_LACSA; Uncharacterized protein
STRING	XP_010258393.1	4e-57	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	8e-34	bHLH family protein