PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000705
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 329aa    MW: 37076.1 Da    PI: 10.2324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683996PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-172875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++q+G g+W++ +++ g++R++k+c++rw +yl
        Lsa000705 28 KGPWTPEEDRKLLAYIQQFGHGSWRALPAKAGLKRCGKSCRLRWTNYL 75
                     79********************************************97 PP
2Myb_DNA-binding55.51.3e-1781125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+  +++++++lG++ W+tIa++++ +Rt++++k++w+++
        Lsa000705  81 RGKFSLEEERTIIQLHALLGNR-WSTIAAHLP-RRTDNEIKNHWNSH 125
                      89********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4992375IPR017930Myb domain
SuperFamilySSF466899.71E-3125122IPR009057Homeodomain-like
SMARTSM007171.3E-142777IPR001005SANT/Myb domain
PfamPF002497.4E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-242982IPR009057Homeodomain-like
CDDcd001676.23E-113075No hitNo description
PROSITE profilePS5129426.98876130IPR017930Myb domain
SMARTSM007173.3E-1680128IPR001005SANT/Myb domain
PfamPF002495.9E-1681125IPR001005SANT/Myb domain
CDDcd001672.83E-1183126No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2683130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRSGRSEKK RKQNSNSNMA GLGVGVKKGP WTPEEDRKLL AYIQQFGHGS WRALPAKAGL  60
KRCGKSCRLR WTNYLRPDIK RGKFSLEEER TIIQLHALLG NRWSTIAAHL PRRTDNEIKN  120
HWNSHIKKRM TKMGIDPMTH KPKSGTQLLG SNLNHMAQWE AARLEAEARL VQKPKNYSNQ  180
PPYLMSPSSI PELHKRSTTV PPPHLPCLDV LKVWQGTLWS NYSINNESLQ SLISTSNVSE  240
NFSTLTAARP VEGNGSCEQG QVKKLNDQIK TQMGTFEEFE FTNDATFING DPLRSPDLWE  300
DFVDLLDGGW NSLTSNFGMI ATPPASPVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29281307108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752258.10.0transcription factor MYB16-like
SwissprotQ9LXF11e-81MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A2J6M4300.0A0A2J6M430_LACSA; Uncharacterized protein
STRINGEOY018541e-100(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-75myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]