PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000774
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 341aa    MW: 38644.8 Da    PI: 6.5077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685152PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-19495PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++q G+g+W++++   g+ R+ k+c++rw +yl
        Lsa000774 14 KGPWTPEEDITLVSYIQQNGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.35.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
        Lsa000774  67 RGNFTEQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.061961IPR017930Myb domain
SuperFamilySSF466897.03E-3011108IPR009057Homeodomain-like
SMARTSM007179.4E-131363IPR001005SANT/Myb domain
PfamPF002494.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-231568IPR009057Homeodomain-like
CDDcd001671.36E-91661No hitNo description
PROSITE profilePS5129424.77562116IPR017930Myb domain
SMARTSM007176.5E-1666114IPR001005SANT/Myb domain
PfamPF002493.5E-1567112IPR001005SANT/Myb domain
CDDcd001673.31E-1169112No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDITLVSYIQ QNGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLDKLH  120
EDTDQETHHP HHGCHSSSSS SYETTMYKGQ WERRLQTDIH MAKQALCDAL SIDNKTINLP  180
VSSSATTSGK SESVIPSSNQ STATYASSAE NIARLLPDWM KCSKKSPQTN SESIETKQTQ  240
SSVIYQQLTS PPSEGYDNSV QFSNSNNMIH NNQINNYYSN YSNSDISQSV SPETSRFQDE  300
SKPSMENQMP PLSLLEKWLF DEASTQGDLM NISLEESDDF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740421.10.0myb-related protein 306-like
SwissprotP813921e-119MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2J6K1240.0A0A2J6K124_LACSA; Uncharacterized protein
STRINGXP_008239949.11e-126(Prunus mume)
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]