PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000837
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 280aa    MW: 30861.7 Da    PI: 9.0888
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58674394PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS159.33.4e-491182801164
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL++cA+avss+++ +++++L+++++++sp+gd+ +R+a+yf+ AL+ar ++++  ly+ l++s+ +    s+ ++a+++++ ++P+ k+s++ aN+
  Lsa000837 118 LKSLLTQCAQAVSSNNTPRVETFLKKIRNHSSPRGDSEERMAHYFADALEARFLGTGMDLYANLASSKIT---ASDIVKAYQVYVSACPFKKMSNIYANK 214
                5789*********************************************************999999998...99************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                +I + + g+ ++HiiDf+i +G+QWp+L+q L++Rp+gpps+RiTg++ p+sg   +e++eetg+r
  Lsa000837 215 MIGNLARGSPKLHIIDFGILYGFQWPCLIQGLSARPGGPPSIRITGIDFPQSGfrPAERVEETGNR 280
                ****************************************************999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.70492280IPR005202Transcription factor GRAS
PfamPF035141.2E-46118280IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
XIEALDLXLS SNQCPGGHFV GNPTGVSLRG KKNRQPSECG GFEQHRSNKH LAGGRREEEL  60
MDTEITAKID KLLLCPGSKE VGLHDELACC PFDNPANPLI KGKQRRKRND PNKEIVDLKS  120
LLTQCAQAVS SNNTPRVETF LKKIRNHSSP RGDSEERMAH YFADALEARF LGTGMDLYAN  180
LASSKITASD IVKAYQVYVS ACPFKKMSNI YANKMIGNLA RGSPKLHIID FGILYGFQWP  240
CLIQGLSARP GGPPSIRITG IDFPQSGFRP AERVEETGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-281032804178Protein SCARECROW
5b3h_A2e-281032803177Protein SCARECROW
5b3h_D2e-281032803177Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753842.10.0scarecrow-like protein 30
TrEMBLA0A2J6M0F40.0A0A2J6M0F4_LACSA; Uncharacterized protein
STRINGXP_002533749.16e-78(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-66SCARECROW-like 14