PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000861
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 252aa    MW: 28442.7 Da    PI: 4.5575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58673504PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.5e-201363255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +ykGVr+++ +g+++Ae+rdp +  krkr++lg+f+t+eeAa a+++a+ kl g
  Lsa000861 13 RYKGVRRRP-WGKFAAEVRDPEK--KRKRIWLGTFDTPEEAALAYDNAAFKLLG 63
               7********.**********733..46************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-151363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-301371IPR001471AP2/ERF domain
PROSITE profilePS5103223.8941371IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-221372IPR016177DNA-binding domain
CDDcd000184.79E-301371No hitNo description
SMARTSM003804.5E-351377IPR001471AP2/ERF domain
PRINTSPR003672.7E-101425IPR001471AP2/ERF domain
PRINTSPR003672.7E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
GGGEPQRPTE WRRYKGVRRR PWGKFAAEVR DPEKKRKRIW LGTFDTPEEA ALAYDNAAFK  60
LLGSRAKVNF PLLIGVNDSP VVLASRWLAL FPQETRRKGV VEPPITTSRA EEESEITVYT  120
TTVRTNDAAT MEVGSSQDAG QLFQTDKWFI PPLIQPPESP ITVLTTTDNT TNTTTSTTDG  180
NLTRLEMGVD HDTHLDFQMF SLKPEEHSPS MVQPSATSDE ASQEEVGTDL DLLWNFDATT  240
PDDFRFLEYF RE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-251274466ATERF1
3gcc_A8e-251274466ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11737RRRPWGKFAAEVRDPEKKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737644.10.0ethylene-responsive transcription factor 6-like
TrEMBLA0A2U1NHW95e-87A0A2U1NHW9_ARTAN; DNA-binding domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.15e-29ethylene-responsive element binding factor 13