PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa000919

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 251aa MW: 27247.9 Da PI: 7.6736

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-3156	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.4	2.4e-16	172	230	4	62
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+e +L ke++el+ke k ++ Lsa000919 172 QQKQRRMIKNRESAARSRERKQAYTVELEALVTQLEEEHAKLLKEVDELNKERLKQLMQ 230 689*************************************************9887666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-16	165	231	No hit	No description
SMART	SM00338	1.5E-16	169	233	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.5E-15	171	231	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.829	171	223	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.15E-19	173	220	No hit	No description
SuperFamily	SSF57959	1.88E-11	173	225	No hit	No description
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MASSSPANQD LQRHQAFGLT DHNSNLISMN MDDLLKNIYE DSRQAPGSFP AGAGGGKTMD 60 ERLKEIVDGS VGDPEMTLED FLTKAGAVRE EDVVKLPPVS ASAVISEYPG VVDPIICGGA 120 GAGAGAGASF QVMPQQHMQF GSAIGTSAGT SGGGRGKRKV VVEDPPVDKA TQQKQRRMIK 180 NRESAARSRE RKQAYTVELE ALVTQLEEEH AKLLKEVDEL NKERLKQLMQ NLVPVLEKRR 240 PPRVLRRTNS M

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023740550.1	0.0	bZIP transcription factor 12-like isoform X1
TrEMBL	A0A2J6K0M9	0.0	A0A2J6K0M9_LACSA; Uncharacterized protein
STRING	XP_009615514.1	2e-68	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	2e-30	G-box binding factor 4