PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001002
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 227aa    MW: 25657.5 Da    PI: 5.6078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681806PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-19621PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52.1e-102166346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT  Ed+l+ da  +++ +   +W +Ia  ++ g+t++q++ ++  
        Lsa001002 21 TWTRYEDKLFEDALVMFPDDvigRWQKIADAVP-GKTAEQVRAHYEV 66
                     7*****************99*************.**********965 PP
2Myb_DNA-binding44.14.8e-14125169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        Lsa001002 125 PWTEEEHRLFLIGLQRYGKGDWRSISRNVVVSRTPTQVASHAQKY 169
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6861771IPR017884SANT domain
SMARTSM007172.5E-81870IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-122076IPR009057Homeodomain-like
PfamPF002494.3E-92165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-62165IPR009057Homeodomain-like
CDDcd001671.48E-72168No hitNo description
PROSITE profilePS5129419.728118174IPR017930Myb domain
SuperFamilySSF466894.02E-17120175IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-18121173IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.6E-12122168IPR009057Homeodomain-like
SMARTSM007177.3E-11122172IPR001005SANT/Myb domain
PfamPF002498.4E-12125169IPR001005SANT/Myb domain
CDDcd001675.70E-9125170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MYHQDTDWAI DAAAAVAAES TWTRYEDKLF EDALVMFPDD VIGRWQKIAD AVPGKTAEQV  60
RAHYEVLVHD LLQIDSGQVE LPSYADDDGD ESFLSWDPEL RASQISFGMT KGSKHGDGER  120
KKGTPWTEEE HRLFLIGLQR YGKGDWRSIS RNVVVSRTPT QVASHAQKYF LRQNSMKKER  180
KRSSIHDITT TTDTIAVPPP PPPSTNFQGG ATPQLGYERQ QNFGYPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1422901179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762897.11e-170transcription factor SRM1-like
SwissprotQ9FNN62e-58SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2J6MJS31e-169A0A2J6MJS3_LACSA; Uncharacterized protein
STRINGXP_009796939.19e-90(Nicotiana sylvestris)
STRINGXP_009618932.11e-89(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-73MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]