PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001051
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 252aa    MW: 28149 Da    PI: 4.8866
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29958486PU_unrefUnigeneView CDS
gnl|UG|Lsa#S32117301PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-23484PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.4e-10175222552
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                kr +r   NR +A+rsR R +++i eLe+ v +L++e ++L  ++  l
  Lsa001051 175 KRVKRILANRQSAQRSRVRTLQYISELERSVTTLQTEVSTLSPRVAFL 222
                8999**********************************9998777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-11171235IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.197173236IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-10175229No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-12175227No hitNo description
PfamPF001708.1E-9175220IPR004827Basic-leucine zipper domain
CDDcd147032.42E-24176226No hitNo description
PROSITE patternPS000360178193IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAQNWPSFAY QMMSVPSSAA QPPNWVDEFL DFSAARRNSH RRSVSDPIAF IESPFIEGCR  60
NSNGINNSLM PCSNNNGFER LDDEQFSSMF PDEDVAANLP STRSTSSNPS TPSDQNSDKD  120
DAKPTPPPEQ LQQHHHQPKN EPEEVEDGGD CQPETESGKP CFNFSSEGTT IVDPKRVKRI  180
LANRQSAQRS RVRTLQYISE LERSVTTLQT EVSTLSPRVA FLDHQRLVLN VDNSALKQRI  240
AALAPDKIFK DA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765017.10.0basic leucine zipper 34-like
SwissprotQ9M2K42e-74BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A2J6MF280.0A0A2J6MF28_LACSA; Uncharacterized protein
STRINGEOY131624e-94(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-67bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]