PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001109

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 257aa MW: 29061.3 Da PI: 7.5809

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58679622	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.4e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG+ekAtPk +l++m+v gLt++hvkSHLQ+YR+ Lsa001109 19 PRLRWTPDLHRSFVHAIDRLGGPEKATPKLVLHMMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.502	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-30	15	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-14	17	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-23	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-7	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGSCGRNGAV RQYIRSKVPR LRWTPDLHRS FVHAIDRLGG PEKATPKLVL HMMDVRGLTI 60 SHVKSHLQMY RSMKSDGNRQ EDEDPHSIGS HNRRQSLDDH HDGCLDHDHH DHTIHPHSFI 120 YTLPSKRKEQ EESIGNLRWQ QQPPISFSSF QHFILHPSFT HVNPLHPESD FLKIPKQGDG 180 NSGSFKRRKM ESSTSTEDED GYGLLLTLSL PHPSTQRSSN ASSTSETSEV YSKPDVNDGS 240 LNKCSVNLDL SIAFCGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023769593.1	0.0	putative Myb family transcription factor At1g14600 isoform X1
TrEMBL	A0A2J6MEI5	0.0	A0A2J6MEI5_LACSA; Uncharacterized protein
STRING	VIT_01s0137g00050.t01	3e-67	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	6e-34	G2-like family protein