PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001173

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 375aa MW: 40497.7 Da PI: 9.3422

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S32116298	PU_unref	Unigene	View CDS
gnl\|UG\|Lsa#S58681837	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-34586	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F r nL+ H r H Lsa001173 59 FICDICNKGFQRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	14.9	7.4e-05	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s+ k H++ + Lsa001173 135 WTCQRCTKKYAVQSDWKAHMKIC 157 58*******************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.75E-7	58	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	0.0037	59	81	No hit	No description
PROSITE profile	PS50157	10.783	59	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.027	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	100	130	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	123	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.75E-7	130	156	No hit	No description
SMART	SM00355	120	135	155	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAVSGTSVEA AECASGGNQA EPPSEMLPPK RKRNLPGTPD PDAEVIALSP NSLLATNRFI 60 CDICNKGFQR DQNLQLHRRG HNLPWKLKQR TGNEIRKRVY VCPEKSCVHH DPSRALGDLT 120 GIKKHFSRKH GEKKWTCQRC TKKYAVQSDW KAHMKICGSK EYRCDCGTLF SRRDSFITHR 180 AFCDALAHET ARAQPQTLAI NNSDQPQLLQ QSFPIMEAVL PPPCSPPPPP LTPSTDVLSP 240 VNSIQSAELP ENATAVNGSG TKKATSLTTA TPATTTGSGG STSNSTSVFA SIFASSAIVE 300 PISLSLSSSL YLSNATNPSL FPPSDHDLQT KHYRQYLPAS QPALSATALL KKAAQMGPKS 360 SNTSFLHALG LALPX

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAVSGTSVEA AECASGGNQA EPPSEMLPPK RKRNLPGTPD PDAEVIALSP NSLLATNRFI  60
CDICNKGFQR DQNLQLHRRG HNLPWKLKQR TGNEIRKRVY VCPEKSCVHH DPSRALGDLT  120
GIKKHFSRKH GEKKWTCQRC TKKYAVQSDW KAHMKICGSK EYRCDCGTLF SRRDSFITHR  180
AFCDALAHET ARAQPQTLAI NNSDQPQLLQ QSFPIMEAVL PPPCSPPPPP LTPSTDVLSP  240
VNSIQSAELP ENATAVNGSG TKKATSLTTA TPATTTGSGG STSNSTSVFA SIFASSAIVE  300
PISLSLSSSL YLSNATNPSL FPPSDHDLQT KHYRQYLPAS QPALSATALL KKAAQMGPKS  360
SNTSFLHALG LALPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-32	131	202	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-32	131	202	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023728565.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-123	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2J6KRY7	0.0	A0A2J6KRY7_LACSA; Uncharacterized protein
STRING	EOY14712	1e-139	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-108	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]