PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001189
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 518aa    MW: 58214.6 Da    PI: 9.8079
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690500PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-55118PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-19115205199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+k++++s+v +  ++ lp +f++++  +k +++ +++ede+g+++++k+i  k++    l++GW++F+ a++L egD++vF+l+++++f  +v ++r+
  Lsa001189 115 FKKIMLKSHVVSCFWMGLPVPFCRSFL-PK-QETLMVIEDENGQQYKLKYIAHKTG----LSAGWRNFAIAHKLLEGDVLVFQLVESNKF--KVYIVRA 205
                89*********************9994.33.5568***************655555....***********************9987777..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-21107206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-23108206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-27113204No hitNo description
PROSITE profilePS5086313.662115206IPR003340B3 DNA binding domain
PfamPF023626.4E-17115205IPR003340B3 DNA binding domain
SMARTSM010192.7E-24115206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MSDSPTSDEG SSDLQLANNE LKTPNSLDAL VTIAQLPPSL PFPFAPITPL TKLSGKRKRL  60
KTSRYDFPSN NAEKKRSSSK HKAKHDPSDT PAQISPTMIR AGELQSSLGS DHPSFKKIML  120
KSHVVSCFWM GLPVPFCRSF LPKQETLMVI EDENGQQYKL KYIAHKTGLS AGWRNFAIAH  180
KLLEGDVLVF QLVESNKFKV YIVRANESKQ VDDAHNLLNH NTNKNHKTQA KLVNKRSEPP  240
TLASELNVNS KAEGGPHKPD LPSKKVKSRL VYKRSEPPTQ SSELNVNSDS EGGPHQPDVP  300
VKNVKSKLVY KRSEPPTHLS ELTSLVNSEA KGGPHQQALS SKKVKTFKDF RITVNKQCID  360
SELSEEIRMS YYKLCNAKKE LLHDNLPEGL YYKLVAGMIG ETVNIANAIK NCKHTTTKEE  420
FDAWDSSLKS FELMGMKVGF LRDRIHMLEK AVFDSENVKK YMEAIEERNR NGITMKILEA  480
KIADLKESNR KIDAILGSLK EKVEGNEVVF QEKVNEPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767912.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A2J6L4Y70.0A0A2J6L4Y7_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-38B3 family protein