PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001208

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 275aa MW: 32053.5 Da PI: 8.1019

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678870	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	113	132	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Lsa001208 113 FVCSLCNKTFNRYNNMQMHM 132 89*****************9 PP
2	zf-C2H2	12.2	0.00054	197	220	1	23
EEET.TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp.dCgksFsrksnLkrHirtH 23 ++C +C+k F k + ++H +++ Lsa001208 197 FTCRkYCTKKFAVKGDWRTHEKNC 220 89******************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.13E-5	109	136	No hit	No description
Pfam	PF12874	6.9E-5	113	132	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.4E-5	113	132	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.741	113	140	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	115	135	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.2E-4	183	218	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MTFSKEQDFS QETIQCLPLL SQLINQDDKD RVLTIKEEDH NIEKLTVTLH IGLPSYAEDS 60 VVTKELFEEF KQEDEIKSDM KMVKFNNDHN SDHDQTRFWI PTPSQILVGP MQFVCSLCNK 120 TFNRYNNMQM HMWGHGSEYR KGPESLKGAQ PAAMLRLPCY CCAQGCKNNI NHPRAKPLKD 180 FRTLQTHYKR KHGVKPFTCR KYCTKKFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD 240 HIRSFGKGHS PHPCLEGFDQ DEKECLTGSE DEVMH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023756857.1	0.0	zinc finger protein WIP3-like
Swissprot	Q9SGD1	1e-112	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A2J6LTH9	0.0	A0A2J6LTH9_LACSA; Uncharacterized protein
STRING	POPTR_0009s14590.1	1e-137	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-115	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]