PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001249
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family E2F/DP
Protein Properties Length: 432aa    MW: 48395.7 Da    PI: 7.3579
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687003PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-31454PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.71.3e-25178242170
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                r+++sL+llt+kf++l++  ++gi++ln++a  L   +v  ++RRiYDi+NVLe+++l+ek +kn+irwk
  Lsa001249 178 RYDSSLGLLTKKFVNLIHADKDGILDLNKAAVIL---EV--QKRRIYDITNVLEGIGLVEKASKNHIRWK 242
                6899******************************...99..****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-26176242IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-31178243IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.07E-16178241IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.1E-23180242IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146607.78E-33256360No hitNo description
SuperFamilySSF1440746.02E-24256360No hitNo description
PfamPF164213.6E-24259358IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
EEVERSVGGF SSSTHSNSKV PPALNLPAXF TNTSPPRPPY LFLLLSFFYI IFQRQQTTRI  60
KHQSAPAVVV VVAMSMSVAA GADDVNLSVQ NPLSRIQQIS FCNPPIATQN LPMFLISPKQ  120
TIKSEAINTN TIPEEVDCPS FGSLPCGVVK RNKKLKAFKL GNQEPNADSG ENLVAACRYD  180
SSLGLLTKKF VNLIHADKDG ILDLNKAAVI LEVQKRRIYD ITNVLEGIGL VEKASKNHIR  240
WKKSKTLSPQ NLDKHVKRLK AELQHLNAEE SRLDECIRET QQRLNSMEFD HNTRKHLYLR  300
GEDFRNLPCF ENETLIAVRA PHGSSIEVPD PDQDYGFSQK QFKLIIRSHT APIDLYLISE  360
SFKESTQEGG SHINKNSRDL QTHLDSVKVN SVDSPSYGIQ KIIPPQNDIE DDYWFGPNPE  420
VSATDLWGPN LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-21177242672PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772070.10.0transcription factor E2FC-like
TrEMBLA0A251UYD51e-143A0A251UYD5_HELAN; Putative winged helix-turn-helix DNA-binding domain-containing protein
STRINGVIT_18s0001g14110.t011e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.24e-81E2F/DP family protein