PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001256
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 305aa    MW: 34457.8 Da    PI: 6.786
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-51523PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.51.1e-22133193259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dDg++WrKYGqKe+ ++++ rsYYrCt++   gC ++k+v+  ++ p    itY g+H+++
  Lsa001256 133 DDGHAWRKYGQKEILNANHQRSYYRCTYKsdqGCLATKQVQMIEDKPPKYRITYFGNHTCN 193
                8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-25118194IPR003657WRKY domain
SuperFamilySSF1182902.35E-24126193IPR003657WRKY domain
PROSITE profilePS5081119.233127190IPR003657WRKY domain
SMARTSM007743.3E-36132194IPR003657WRKY domain
PfamPF031066.1E-24133192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MESPTWPESS QSNRIKAIQE LTNGQEWTNK LQEALWCPEN FESDPTSIDG VLLQILEMFE  60
KTISIMGSSS INNATLDHLL TSDLHSSASL GKPKSENINE SPNSVIPVKI KKRCVKRRKS  120
SWTSTKVTSD LIDDGHAWRK YGQKEILNAN HQRSYYRCTY KSDQGCLATK QVQMIEDKPP  180
KYRITYFGNH TCNNLQRAPP IILDSPDPRD ESIILNFETK ELIKKKHLHP NFLSIKQELK  240
DGFPSLSSLG GNPSSSCNND PPWGPFTHVP QDPTESVSLM SSWLDHEEMV SPRAYSGLDR  300
GDIIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22132192868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749894.10.0probable WRKY transcription factor 70
TrEMBLA0A2J6M8R90.0A0A2J6M8R9_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-29WRKY DNA-binding protein 70