PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001397

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 197aa MW: 22493.2 Da PI: 8.5612

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58670872	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	185.2	1.5e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv +yLk+k++g+++el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v s +++ Lsa001397 6 LPPGFRFHPTDEELVAYYLKRKINGHEIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRKVNS-QSR 103 79**************************.99***********6434555777**********************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+kktLv+y+grap+g++tdWvmheyrl Lsa001397 104 AMGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-65	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	61.853	6	158	IPR003441	NAC domain
Pfam	PF02365	5.3E-31	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING HEIELEVIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRKVNS QSRAMGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET ASGLQLQDAY SLCRVFKKSL IPPKTTVPGD HYATAASDLS 180 SCIDLYSEGG RGGEDMX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-58	1	159	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-58	1	159	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-58	1	159	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-58	1	159	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-58	1	159	15	169	NAC domain-containing protein 19
3swm_B	2e-58	1	159	15	169	NAC domain-containing protein 19
3swm_C	2e-58	1	159	15	169	NAC domain-containing protein 19
3swm_D	2e-58	1	159	15	169	NAC domain-containing protein 19
3swp_A	2e-58	1	159	15	169	NAC domain-containing protein 19
3swp_B	2e-58	1	159	15	169	NAC domain-containing protein 19
3swp_C	2e-58	1	159	15	169	NAC domain-containing protein 19
3swp_D	2e-58	1	159	15	169	NAC domain-containing protein 19
4dul_A	1e-58	1	159	12	166	NAC domain-containing protein 19
4dul_B	1e-58	1	159	12	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023763598.1	1e-144	NAC domain-containing protein 86-like
Swissprot	A4VCM0	2e-98	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A2J6LE90	1e-139	A0A2J6LE90_LACSA; Uncharacterized protein
STRING	cassava4.1_031698m	1e-113	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-102	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]