PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001489
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 406aa    MW: 45152.5 Da    PI: 7.8529
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686970PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-44106PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.57.4e-25176231359
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                DgynWrKYGqK+vk+ e +rsYY+Ct+++C++kk +e +++ +++++i+Y+g+H+he
  Lsa001489 176 DGYNWRKYGQKQVKSPEGSRSYYKCTYNECEAKK-IESCDQYNSITKIVYKGQHKHE 231
                9*******************************98.*********************8 PP
2WRKY924.5e-29316373259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dgy+WrKYGqK+vkg+++pr+YY+CtsagCpv+k++e + +  + v+ tY+g H+h+
  Lsa001489 316 ADGYRWRKYGQKMVKGNPHPRNYYKCTSAGCPVRKHIEMAVDGSSEVILTYKGVHDHD 373
                6****************************************99999***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-22162233IPR003657WRKY domain
SuperFamilySSF1182901.57E-19169233IPR003657WRKY domain
SMARTSM007742.0E-22174232IPR003657WRKY domain
PfamPF031062.9E-18176230IPR003657WRKY domain
PROSITE profilePS5081117.201176233IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-30300375IPR003657WRKY domain
PROSITE profilePS5081131.146310375IPR003657WRKY domain
SuperFamilySSF1182903.66E-26311375IPR003657WRKY domain
SMARTSM007746.6E-33315374IPR003657WRKY domain
PfamPF031061.5E-22317372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDDDSDRSSE ATELENLTTQ RKRHSDTDDA EDSGTVNEDE FDDDETDDQR EVSELDTSPM  60
EIDAYSRTCQ SETLVSGLAE VPIQYEMRRD ELEHLKNQLQ GSHQEALAIV IAKAAQSQSG  120
SKIQIPIIPS LPSELSPISN IPKSNSQGEI LSIEGNPIKS DHKTISTSRT VRTPIDGYNW  180
RKYGQKQVKS PEGSRSYYKC TYNECEAKKI ESCDQYNSIT KIVYKGQHKH EQPKKVFTRR  240
GKVLSSSKGQ ERKFTSKLCK SSGPVSNGPI LVEEMDAPPP KRRVKKNSMV SPGSVLKAAK  300
KPKFVVHAAG DVGISADGYR WRKYGQKMVK GNPHPRNYYK CTSAGCPVRK HIEMAVDGSS  360
EVILTYKGVH DHDIPNIHTK HININSPNAN ALLLTAVSSP NPDILT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-24306375877Probable WRKY transcription factor 4
2lex_A8e-24306375877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733797.10.0probable WRKY transcription factor 32
SwissprotP595831e-75WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2J6KFG70.0A0A2J6KFG7_LACSA; Uncharacterized protein
STRINGEMJ052983e-91(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.13e-77WRKY DNA-binding protein 32