PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001572
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 450aa    MW: 49947.1 Da    PI: 4.8051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691254PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-48626PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.7e-163986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +l ++v q G g+W+++ +  g+ R++k+c++rw ++l
        Lsa001572 39 KGPWTSAEDAILMEYVSQNGEGNWNAVQKLSGLSRCGKSCRLRWTNHL 86
                     79*******************************************996 PP
2Myb_DNA-binding491.4e-1592135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ l++++++++G++ W++ a +++ gRt++++k++w++
        Lsa001572  92 KGAFTPEEERLIIELHAKMGNK-WARMAVELP-GRTDNEIKNFWNT 135
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1053686IPR017930Myb domain
SuperFamilySSF466893.15E-2937133IPR009057Homeodomain-like
SMARTSM007174.8E-133888IPR001005SANT/Myb domain
PfamPF002498.6E-143986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-234093IPR009057Homeodomain-like
CDDcd001673.02E-94186No hitNo description
PROSITE profilePS5129424.20787141IPR017930Myb domain
SMARTSM007171.6E-1591139IPR001005SANT/Myb domain
PfamPF002491.1E-1492135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2594140IPR009057Homeodomain-like
CDDcd001677.33E-1294135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MTSESEERIS CKNSPSFDEG STESERNMVE GTGFGSLKKG PWTSAEDAIL MEYVSQNGEG  60
NWNAVQKLSG LSRCGKSCRL RWTNHLRPDL KKGAFTPEEE RLIIELHAKM GNKWARMAVE  120
LPGRTDNEIK NFWNTRTKRK QRAGLPIYPH DISFQQLNDN SQNQNMLMFP NGDSGIFPPT  180
TNLHIPSIDY KDFILNHEFY QNQIPTESSL LDIAFPMPTP YPPKRFRPGG GGGGGLGDVF  240
SGLNGYEDEK IGQTLTPSSS SYLYNTCTGS HAFINGNNCS SFEPNLWAMK NELPSLQYFH  300
GAPPSSSSCS SFEIEWSESD SHSRRNSGLL EAVLHESETL KISKTKNDLN NVDDQNLVSD  360
CYGSPLTYSA ASVFSEYTPI SGTSMDEHLS VEATSVKQEA GESDDIWNDV SCLRPDSLLG  420
LNWFSSDPIT SLVSHHDDTS TTIHTGSQYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30331401107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141RTKRKQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748926.10.0transcription factor GAMYB-like isoform X1
RefseqXP_023748927.10.0transcription factor GAMYB-like isoform X2
TrEMBLA0A2J6JHJ00.0A0A2J6JHJ0_LACSA; Uncharacterized protein
STRINGSolyc06g073640.2.11e-107(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-67myb domain protein 101