PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001582
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 512aa    MW: 55884.8 Da    PI: 7.3284
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-40330PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.92.3e-17129217186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +W++  + +L++a+ ++  +l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk +++++ +    +++s++p+f+++e
  Lsa001582 129 EWSDTAIACLLDAYLDKFMQLNRGNLRGRDWEEVASIVseRCEKQTKSVEQCKNKVDNLKKRYKLERHRMMNTnGGNATSHWPWFKKME 217
                5*************************************777778899*****************9999877763478889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-20127219No hitNo description
Gene3DG3DSA:3.40.1160.102.6E-71269504IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33271505IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.26E-56272504IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.49E-120274505No hitNo description
PfamPF006965.7E-23275484IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MASSDDDFPL IGDTTTTNHQ TNPDFHHQLT GNSHFLASQT TPINAPPPRA AQEANGEGYN  60
GGAFCSQPMV VAPYENESDP NRSRINGARS EKWSDREELS DGGTPYHYSK KTKIAGSSSG  120
GEYRKDREEW SDTAIACLLD AYLDKFMQLN RGNLRGRDWE EVASIVSERC EKQTKSVEQC  180
KNKVDNLKKR YKLERHRMMN TNGGNATSHW PWFKKMEQIV GNSLPLKTVL SEENSAGGMS  240
SPVRQSKRYG TATSSPSCQL TTIKPKPVTN SRWRRVVFKI SGAALAGTGS NSVDPKVAMH  300
IAKEVSMACN VGIEVAIVVG GRNFFCGDTW VTATGMDRST AYQIGMMATV MNSILIQSAL  360
EKLGVETRVQ SAFSMPEVFE PYSRQRAIRH LEKGRVVIFG GIGAGTGNPL FSTDTAAALR  420
ASEIHADAFI KGTNGDGVYE CDSIGNVTFE HICFRELASR GVSSMDMMAA TFCEENGIPV  480
VIFNLHEPGN ISRALSGEHV GTLIDQTGRA VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-622735049239Uridylate kinase
3ek5_B4e-622735049239Uridylate kinase
3ek5_C4e-622735049239Uridylate kinase
3ek5_D4e-622735049239Uridylate kinase
3ek5_E4e-622735049239Uridylate kinase
3ek5_F4e-622735049239Uridylate kinase
3ek6_A4e-622735049239Uridylate kinase
3ek6_B4e-622735049239Uridylate kinase
3ek6_C4e-622735049239Uridylate kinase
3ek6_D4e-622735049239Uridylate kinase
3ek6_E4e-622735049239Uridylate kinase
3ek6_F4e-622735049239Uridylate kinase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758075.10.0uncharacterized protein LOC111906560
TrEMBLA0A118JZI50.0A0A118JZI5_CYNCS; Aspartate/glutamate/uridylate kinase
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein