PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001665

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRF

Protein Properties

Length: 303aa MW: 33771.9 Da PI: 7.5891

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58681672	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-42948	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.4	5.3e-23	89	133	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +k+CErH++rgr+rsrk++e+ Lsa001665 89 DPEPGRCRRTDGKKWRCSKEAFHESKYCERHMNRGRNRSRKPVES 133 79****************************************986 PP
2	QLQ	64.3	3e-22	25	60	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+l+yKyL+a++PvP++L+++i++ Lsa001665 25 PFTAVQWQELEHQALIYKYLVAGVPVPSDLVLPIRR 60 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.2E-12	24	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.91	25	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.5E-16	25	59	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.213	89	133	IPR014977	WRC domain
Pfam	PF08879	5.9E-20	90	132	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
XHARRFSGSK SVAVSGGGGD WYRAPFTAVQ WQELEHQALI YKYLVAGVPV PSDLVLPIRR 60 SFEALSAKLL HHPALGYTNL SLYYGKKFDP EPGRCRRTDG KKWRCSKEAF HESKYCERHM 120 NRGRNRSRKP VESQSTAKGG SYQNVISTAT AKSLNPITTN SGTGSYNFGN NGSKLQLDTI 180 PYGINTKDLR YSQEQTVTVN VDNQNYALKL CGDSNDNDLD NSWSSQVVTD SSHNDSYSNT 240 FEPIPMPMID DDANNSISMS SSSSSSKQQS QQHFCFFGGE IDQVNHDEQD NSMLPIPWSN 300 LNA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735139.1	0.0	growth-regulating factor 4-like
TrEMBL	A0A2J6KCP0	0.0	A0A2J6KCP0_LACSA; Uncharacterized protein
STRING	Solyc08g075950.1.1	7e-79	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-47	growth-regulating factor 5