PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001713
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 539aa    MW: 58890.1 Da    PI: 6.3274
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-35841PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.81.1e-16157245186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +W++  +  L++a+ e+  +l+rg+l+  +Weev++++  r +  ++s +qCk+k +nl+kryk ++++  ++   +++s++p+++++e
  Lsa001713 157 EWSDTAIAFLLDAYLEKFMQLNRGNLRVRDWEEVAAVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRVMNNnGGNTTSHWPWYQKME 245
                5*************************************666677899*****************9988654442367788********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-19155247No hitNo description
Gene3DG3DSA:3.40.1160.108.6E-64287532IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.2E-49300532IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.53300533IPR015963Uridylate kinase, bacteria
CDDcd042542.88E-109303533No hitNo description
PfamPF006962.5E-18304512IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
VYNAVPTFTA DSNPNPNVLS MASCDDEFVL IGDDSTTNSH QTNQAFPPPP LTTAHLLASK  60
APPFNALPPP GATHDGVLQA SGEGYSDHAF GSQPMVVVTY ENESDPNRSG ISAARNEKRS  120
DCEDLSDGGT PYSYNKKSKV AGSSSGNGGE YRKDREEWSD TAIAFLLDAY LEKFMQLNRG  180
NLRVRDWEEV AAVVSERCEN QSKSVEQCKN KVDNLKKRYK LERHRVMNNN GGNTTSHWPW  240
YQKMEQIVGN SLPLKPALDE DKSVGGINSS ARQSKRYTTA TSSPNNHQIT NMEPKSVTNP  300
RWRRVVFKIS GSAFTGTDSQ NIDPKVVMLI AREVSIACHI GIEVAIVVGG RNFFCGDTWV  360
TSNGLDRTTA YQIGMMATVM NSILLQSTLE KLGVVTRVQS SFCMPEVSEP YNKQRAIRHL  420
EKGRVVIFGG IGAGTGNPLF STDTAAALRA SEIHADVVIK GSSLHGIYDC AIGESEYEHI  480
SFREFASRGV ALMDMMAVTF CQENGIPVVM FNLDEVGNIS RALCGEHIGM LIDLNGRVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A6e-5830253250279Uridylate kinase
3nwy_B6e-5830253250279Uridylate kinase
3nwy_C6e-5830253250279Uridylate kinase
3nwy_D6e-5830253250279Uridylate kinase
3nwy_E6e-5830253250279Uridylate kinase
3nwy_F6e-5830253250279Uridylate kinase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023745955.10.0uncharacterized protein LOC111894112 isoform X1
TrEMBLA0A2J6JP350.0A0A2J6JP35_LACSA; Uncharacterized protein
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein