PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001806
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 188aa    MW: 22182.6 Da    PI: 5.5578
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58670965PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.39.3e-1575128558
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                +++rr+++NRe+ArrsR RK++ ++eL   v  L  eN++L ++l++ + + ++
  Lsa001806  75 RKQRRMISNRESARRSRMRKQKHLDELWSQVIWLRDENHQLVDKLNKFSGTHDQ 128
                689***************************************999987766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.7E-1471135IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.35873136IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.3E-1275148No hitNo description
SuperFamilySSF579592.75E-1375123No hitNo description
PfamPF001706.1E-1375133IPR004827Basic-leucine zipper domain
CDDcd147022.84E-1976123No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MQPGENSHYL YIPNPNPDTT NLTMNLQNSP ILQFNINTPS NPFYNHHIHP QYQEISPYFS  60
DEADDQQQIN LINERKQRRM ISNRESARRS RMRKQKHLDE LWSQVIWLRD ENHQLVDKLN  120
KFSGTHDQVL QENAQLKEEA SELREMVNKL QLNGTYPSLI DLDDINSNVL YLRNESLNPS  180
ISSSSEFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18794RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765547.11e-136basic leucine zipper 43-like
SwissprotQ9FMC24e-35BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2J6LA301e-116A0A2J6LA30_LACSA; Uncharacterized protein
STRINGVIT_14s0083g00700.t012e-65(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-46basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]