PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001825
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 243aa    MW: 28051.5 Da    PI: 9.1166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-38872PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604e-191392386
               EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
               k+l  s+ ++ + l+lp  fae++ ++++++  t++l+++s  +W+vk+   k +++y++ +GW +F k+n+L+ gD +vF+l +
  Lsa001825 13 KIL--SSDSEDH-LTLPPAFAEKYlEKDNNKRGTVVLKTKSAVEWSVKY--FKIKDEYYFMDGWVKFMKDNRLQMGDLLVFSLLS 92
               555..4455554.************555556669***************..9999999***********************9765 PP
2B343.94.4e-14146240497
                E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                v+++ ++l +  l++p +f++++  +++e s+  +le ++gr+W    + + k ++ + + +Wk+F ++n+L +gD++v++l++++++ l+v++f
  Lsa001825 146 VTMKLSYLGEWGLYVPIRFLKRYlLSNNEMSVNCVLEVSDGRKWGPIKCRDYKTCGKLYGPNWKKFREDNQLGVGDVCVLELMNEMKKVLKVTIF 240
                566777777777***********955567899************76555677777778899**********************999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.6488107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-199109IPR015300DNA-binding pseudobarrel domain
CDDcd100177.09E-1710104No hitNo description
SMARTSM010191.2E-1111102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.71E-1912109IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-171391IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-15135241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-16137241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-13142240No hitNo description
PROSITE profilePS508639.46143243IPR003340B3 DNA binding domain
SMARTSM010192.0E-6144243IPR003340B3 DNA binding domain
PfamPF023622.2E-13144240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNFKYGDEAS FYKILSSDSE DHLTLPPAFA EKYLEKDNNK RGTVVLKTKS AVEWSVKYFK  60
IKDEYYFMDG WVKFMKDNRL QMGDLLVFSL LSPPPNSIFQ VVFYAPNGCV KHQICSSDLP  120
CKEQRSRNGS LESAKSFKSD KPFYSVTMKL SYLGEWGLYV PIRFLKRYLL SNNEMSVNCV  180
LEVSDGRKWG PIKCRDYKTC GKLYGPNWKK FREDNQLGVG DVCVLELMNE MKKVLKVTIF  240
GGC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023730138.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X2
TrEMBLA0A2J6KP041e-179A0A2J6KP04_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-13B3 family protein