PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001881
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 378aa    MW: 41070 Da    PI: 9.5247
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-12264PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31306363359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Lsa001881 306 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDASMLIVTYEGEHNHS 363
                99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.5E-17257302IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-33292363IPR003657WRKY domain
PROSITE profilePS5081130.033299365IPR003657WRKY domain
SuperFamilySSF1182901.09E-26301363IPR003657WRKY domain
SMARTSM007741.8E-37304364IPR003657WRKY domain
PfamPF031066.8E-27306362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
PDTIVLDGCW VLLKNLVDSK HLLFDFHGGG FDXMLTEPPA LHNKIEENSV QEAAAAGLQS  60
VENFIRLLSS SSQSYQSNTN TTSSSSSSPP AGATDSSATT DYVAVVDVAV TKFKKFISLL  120
DRNRTGHARF RRGPVSVSVS NSNPPEKISP LVPAPASVPH QKLYSPAPIQ QRMPPVPQST  180
LHHPLAISGS FDRKDFPVTT ISFAAPPPPA SQVNSFRSTL TGDTDSLQPS MSSGFQITNM  240
SQASSGCQPN LSSSSFKRKC NSMDDSHTKC ANSSGRCHCS KKRKSRMRKQ IRVPAISMKM  300
ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSLRGCPARK HVERALDDAS MLIVTYEGEH  360
NHSHNVNDTP GAIVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21292362271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023741067.10.0probable WRKY transcription factor 7
SwissprotQ9STX05e-88WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2J6JZN50.0A0A2J6JZN5_LACSA; Uncharacterized protein
STRINGSolyc04g078550.2.11e-135(Solanum lycopersicum)