PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001931

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

LBD

Protein Properties

Length: 216aa MW: 23790 Da PI: 8.2098

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58674944	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.1	7.1e-44	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l+ ++reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+q++ +l+ +k+e Lsa001931 16 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELSATQREDAVNSLAYEADARLRDPVYGCVGLISILQHRLRQVQIDLENAKRE 115 7*********************************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.88	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-43	16	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MYAVVKVKEK MSSNSPCAAC KFLRRKCTQE CVFAPYFPPD QPQKFANVHK VFGASNVAKI 60 LNELSATQRE DAVNSLAYEA DARLRDPVYG CVGLISILQH RLRQVQIDLE NAKRELANYI 120 GPSAMLPILN QGFIQQSALP YNMQPEPVLG LTGPRSFREV QQILQDHQQQ IGVTNGERGH 180 PEVIRNYDQQ RSSGDHLGFS GGFDAVSAAS GQVSGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-50	13	119	8	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-50	13	119	8	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023729053.1	1e-160	LOB domain-containing protein 36-like
Refseq	XP_023729054.1	1e-160	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-72	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2J6KRI0	1e-150	A0A2J6KRI0_LACSA; Uncharacterized protein
STRING	XP_009600699.1	6e-81	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-74	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]