PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001947
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 159aa    MW: 17339.1 Da    PI: 8.1139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58668177PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-2076125255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp   + +  r++lg+f ta  Aa+a++ a+++++g
  Lsa001947  76 KYRGVRRRP-WGKWAAEIRDP---N-KaSRVWLGTFNTAIAAARAYDDAALNFRG 125
                8********.**********9...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-3375134IPR001471AP2/ERF domain
CDDcd000187.46E-2076135No hitNo description
SMARTSM003802.6E-3676139IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2276134IPR016177DNA-binding domain
PfamPF008476.7E-1476125IPR001471AP2/ERF domain
PROSITE profilePS5103224.69876133IPR001471AP2/ERF domain
PRINTSPR003677.5E-147788IPR001471AP2/ERF domain
PRINTSPR003677.5E-14115135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
GYGGSREEEM SAMVSALSHV VAGGGCSGRA GKRGREEDVH VMTQDSIIAH DQHGVADGVE  60
AATKTPREDE QQPKRKYRGV RRRPWGKWAA EIRDPNKASR VWLGTFNTAI AAARAYDDAA  120
LNFRGSKAKL NFPEDVHLVE REEHRNSCGS SGCDGAQHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-22761381477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734620.11e-115ethylene-responsive transcription factor ERF110-like
TrEMBLA0A2J6KDP01e-113A0A2J6KDP0_LACSA; Uncharacterized protein
STRINGXP_006464539.16e-36(Citrus sinensis)
STRINGXP_006427894.15e-36(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-29ethylene response factor 110