PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002096
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 258aa    MW: 28565.2 Da    PI: 4.7295
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-12074PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.95.2e-09126174351
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                 +k+ +r  +N+ AA rsR+RKk++++ Le k+   eae k+L + l+ 
  Lsa002096 126 LDKKRKRQLRNKDAALRSRERKKMYVKDLEMKSRYYEAECKRLGSMLQC 174
                689*************************************999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.9E-11120186No hitNo description
SMARTSM003381.0E-6124188IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.404126183IPR004827Basic-leucine zipper domain
PfamPF001705.2E-7127182IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10128186No hitNo description
CDDcd147042.88E-16129180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEEQIDWDNL FDFDASFSDP SPNPILPISS PNHANSQSPL SVDDIEQLLL NDDDETHNAD  60
ALNSVQDAVD VFFHDILLDS PLDVEKSGEV VDISDGDNSV EDQNNEAIVD HKEEKENSDD  120
DPNDPLDKKR KRQLRNKDAA LRSRERKKMY VKDLEMKSRY YEAECKRLGS MLQCFIAENQ  180
ALRFSLHSSK AYNASTTKQE SAXALLGIPA VGFPALVGVH SLPARSSQPA PAKTRGSSTG  240
NRGRRKATTK SGCKEGGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023743807.11e-146bZIP transcription factor 60
TrEMBLA0A2J6JTL51e-144A0A2J6JTL5_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.12e-19basic region/leucine zipper motif 60