PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002169
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 323aa    MW: 36148.5 Da    PI: 6.1058
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683971PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.83.1e-18243276134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C++ kTp+WR gp g+ktLCnaCG+++++ +
  Lsa002169 243 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 276
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.7E-821316IPR016679Transcription factor, GATA, plant
SMARTSM004015.9E-14237287IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-14240300No hitNo description
PROSITE profilePS5011411.2241273IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14241275IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.10E-14242291No hitNo description
PROSITE patternPS003440243268IPR000679Zinc finger, GATA-type
PfamPF003206.2E-16243276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MECIEAKALK SSFLKEFGSK STQQTLFEDL WCVAGIDNVV NVSPDEFSVD DLLDLSDKDF  60
NNSDGGCFEE YSEEDEEKDS MISSHFSSTG DLVSLPAGEI HLPVDDMENL EWLSQIVDDS  120
TSEFSLSFPP TNLKKTVKFT MNRHEPVRPV IPSFTVLGLS YPVPRKCRSK RSKKTGQVWS  180
GLTESSMDTS SSYDSSTTMH SLNPVQIIQS IFNFQTPPTK KHKKNTGTAI ASDLNGCITQ  240
RRCTHCQVQK TPQWRTGPLG PKTLCNACGV RFKSGRLYPE YRPASSPTFS GDLHSNSHRK  300
VLEMRKKKET EPDFSFGFDS FSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739679.10.0GATA transcription factor 5-like
TrEMBLA0A2J6K2K80.0A0A2J6K2K8_LACSA; GATA transcription factor
STRINGXP_009631302.12e-91(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-59GATA transcription factor 5