PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002174
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 557aa    MW: 60931.7 Da    PI: 6.427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681867PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-18422PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.3e-16331377455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Lsa002174 331 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 377
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.92E-18323381No hitNo description
Gene3DG3DSA:4.10.280.104.0E-20324385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-21324390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-14331377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MPLSEFYRSD NETNESPQQK PTDISHIPND EFVELVWEKG QIMMQGQTSK ARKTPVSSNF  60
LFHTPKVQEK EGLLDVPMSE MGLHPDDDMV PWLNYPLDDY CSDLLPEISG VTGNDHNTLN  120
VLDKRSSYNH SNKDSHLHNV SRSSHILDPS IRSVVTDIGS SNCRNKPQNL EKMVQKQDSL  180
LPYSSSTLLN FSHFSRPAAM AKANLLNHGP QKENGFPGRP GLDSGKVGLK PIEEPRCVEK  240
SSNMVVDANV GKAGVETEKS NEPVGASSSV CSGNSAERAS NDLTKNCKRK SHDTEDFECQ  300
SQDAEEESLG TKTAATSRGG SGSKRSRAAE VHNLSERRRR DRINEKMRAL QELIPNCNKV  360
DKASMLDEAI EYLKTLQIQV QIMSMGTGLC MPPMMFPTGM QHMHPHFSPM GIGMGMSYGM  420
GMGMGMGMGM EMNGGPQGHP HMFPFPPTTQ GSRHPIPGLD AGQGIPIPRS SFPVYGHPGQ  480
GMPMVFPQSP MPGFPMNPAV RQMGSQMESP VVAPTSKDPM TQLSNQSHVA NKSLNQSTLV  540
DQKDEVLDIG CSTAGVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287291KRKSH
2335340ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742572.10.0transcription factor PIF3-like
TrEMBLA0A118JW170.0A0A118JW17_CYNCS; Basic helix-loop-helix leucine zipper transcription factor
STRINGVIT_14s0060g00260.t011e-137(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-65phytochrome interacting factor 3