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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Lsa002289 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family | GRAS | ||||||||
| Protein Properties | Length: 556aa MW: 62755.7 Da PI: 4.8033 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 289.3 | 1e-88 | 185 | 554 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalkl..fsevsPilkfshlt 97
+Ll++Ae vs +++ a++++ar a +g+p++Rl++y+ eAL++r+ + ++ +l+ + +++n + + + +++ P+ ++ h+t
Lsa002289 185 FQLLTAAENVSRKQFDVASKFIARCGWVACDSGSPVERLVFYLCEALQKRIGKeIDIPVATKLEKQCLKNENhmALGTNMT--FlaVYQALPFNQVLHFT 282
589*************************************************93333455555444444444222222233..24599************ PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
q+I + v ++++vH iD+ i G+QW a++qaLa+++++ l++T+++ ++ +e+ etg+rL++fA++l +pf+f++lv ++++++e ++++v+
Lsa002289 283 GIQTIIDQVGTSKQVHLIDIHIRSGVQWTAMMQALANQSSQIELLKLTAFATT--SDVQEVGETGKRLESFATTLSLPFSFKMLVLSDITEVEEKQFEVQ 380
****************************************************5..59******************************************* PP
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
gE++aV +++ l ++ +++ le+ +++++k+++P +vv++e ea+h+s+sF++rf+e+l +y a fd+l+a ++ ++ +r+++E + ++ i+n+
Lsa002289 381 DGEVIAVYCHMILRTMILKPQRLEN----MMRAIKTINPSIVVIAEVEANHTSTSFVKRFTETLFFYGAYFDCLDACMSGDNVHRSVMEGVHFADGIQNI 476
*****************99999999....*********************************************************************** PP
GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
va eg+er r ++ +W++ + ++G+ +++ls++ qa+l+l++++ + ++e++ ++l++gWk+ pL s+S W+
Lsa002289 477 VASEGDERMSRSVKMDTWKSFFARFGMVEIELSDSCLYQAQLVLQRFScANSCMLENNGKCLIIGWKGTPLHSLSTWK 554
************************************************9999*************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 41.522 | 157 | 533 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 3.6E-86 | 185 | 554 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 556 aa Download sequence Send to blast |
MYPNSILNET QFLDYNPLER YDYEQVDNQF PAPEIENQAV DEELPPLEDV NNTINQFDAQ 60 RLSVQVPDLD NHDQTPFLIP EFDQLTKGIA NSKLKSKSAN RDLNSPASLE LLSFSRSKFK 120 RLPDEIVPDC AGKLSTVEII ELAAEKFIKF SAQQVNGYTI FTHPYGSSAF TSLSIDETRE 180 VELVFQLLTA AENVSRKQFD VASKFIARCG WVACDSGSPV ERLVFYLCEA LQKRIGKEID 240 IPVATKLEKQ CLKNENHMAL GTNMTFLAVY QALPFNQVLH FTGIQTIIDQ VGTSKQVHLI 300 DIHIRSGVQW TAMMQALANQ SSQIELLKLT AFATTSDVQE VGETGKRLES FATTLSLPFS 360 FKMLVLSDIT EVEEKQFEVQ DGEVIAVYCH MILRTMILKP QRLENMMRAI KTINPSIVVI 420 AEVEANHTST SFVKRFTETL FFYGAYFDCL DACMSGDNVH RSVMEGVHFA DGIQNIVASE 480 GDERMSRSVK MDTWKSFFAR FGMVEIELSD SCLYQAQLVL QRFSCANSCM LENNGKCLII 540 GWKGTPLHSL STWKFI |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 2e-39 | 184 | 554 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023730443.1 | 0.0 | DELLA protein RGL1-like | ||||
| TrEMBL | A0A2J6MDL7 | 0.0 | A0A2J6MDL7_LACSA; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G66350.1 | 8e-56 | RGA-like 1 | ||||




