PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002289
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 556aa    MW: 62755.7 Da    PI: 4.8033
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692114PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.31e-881855543374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalkl..fsevsPilkfshlt 97 
                 +Ll++Ae vs +++  a++++ar    a  +g+p++Rl++y+ eAL++r+ +     ++ +l+ +  +++n     + +   +   +++ P+ ++ h+t
  Lsa002289 185 FQLLTAAENVSRKQFDVASKFIARCGWVACDSGSPVERLVFYLCEALQKRIGKeIDIPVATKLEKQCLKNENhmALGTNMT--FlaVYQALPFNQVLHFT 282
                589*************************************************93333455555444444444222222233..24599************ PP

       GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  q+I + v ++++vH iD+ i  G+QW a++qaLa+++++   l++T+++    ++ +e+ etg+rL++fA++l +pf+f++lv ++++++e ++++v+
  Lsa002289 283 GIQTIIDQVGTSKQVHLIDIHIRSGVQWTAMMQALANQSSQIELLKLTAFATT--SDVQEVGETGKRLESFATTLSLPFSFKMLVLSDITEVEEKQFEVQ 380
                ****************************************************5..59******************************************* PP

       GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 gE++aV +++ l ++  +++ le+    +++++k+++P +vv++e ea+h+s+sF++rf+e+l +y a fd+l+a ++ ++ +r+++E + ++  i+n+
  Lsa002289 381 DGEVIAVYCHMILRTMILKPQRLEN----MMRAIKTINPSIVVIAEVEANHTSTSFVKRFTETLFFYGAYFDCLDACMSGDNVHRSVMEGVHFADGIQNI 476
                *****************99999999....*********************************************************************** PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                va eg+er  r  ++ +W++ + ++G+ +++ls++   qa+l+l++++  +  ++e++ ++l++gWk+ pL s+S W+
  Lsa002289 477 VASEGDERMSRSVKMDTWKSFFARFGMVEIELSDSCLYQAQLVLQRFScANSCMLENNGKCLIIGWKGTPLHSLSTWK 554
                ************************************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.522157533IPR005202Transcription factor GRAS
PfamPF035143.6E-86185554IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MYPNSILNET QFLDYNPLER YDYEQVDNQF PAPEIENQAV DEELPPLEDV NNTINQFDAQ  60
RLSVQVPDLD NHDQTPFLIP EFDQLTKGIA NSKLKSKSAN RDLNSPASLE LLSFSRSKFK  120
RLPDEIVPDC AGKLSTVEII ELAAEKFIKF SAQQVNGYTI FTHPYGSSAF TSLSIDETRE  180
VELVFQLLTA AENVSRKQFD VASKFIARCG WVACDSGSPV ERLVFYLCEA LQKRIGKEID  240
IPVATKLEKQ CLKNENHMAL GTNMTFLAVY QALPFNQVLH FTGIQTIIDQ VGTSKQVHLI  300
DIHIRSGVQW TAMMQALANQ SSQIELLKLT AFATTSDVQE VGETGKRLES FATTLSLPFS  360
FKMLVLSDIT EVEEKQFEVQ DGEVIAVYCH MILRTMILKP QRLENMMRAI KTINPSIVVI  420
AEVEANHTST SFVKRFTETL FFYGAYFDCL DACMSGDNVH RSVMEGVHFA DGIQNIVASE  480
GDERMSRSVK MDTWKSFFAR FGMVEIELSD SCLYQAQLVL QRFSCANSCM LENNGKCLII  540
GWKGTPLHSL STWKFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-391845544375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023730443.10.0DELLA protein RGL1-like
TrEMBLA0A2J6MDL70.0A0A2J6MDL7_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-56RGA-like 1