PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002401

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 405aa MW: 45125.5 Da PI: 4.9374

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58690172	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-11707	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.5	7.5e-34	199	253	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lm++++Lt++hvkSHLQkYR+ Lsa002401 199 KPRMRWTPELHESFVEAVNQLGGSERATPKGVLKLMNIESLTIYHVKSHLQKYRT 253 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.527	196	256	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-31	197	255	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-18	198	253	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-24	199	253	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	201	252	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-22	287	332	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDITPVCLKQ SGEKQLNDHM GVSRAMSSSN PVIPGFEGKY KKISDSIINT NTLFPDQNQI 60 VVSADTMSSF QTSNFVNSQS MSLIGYTSQT DDISWTAESL KDLIDFPENV AGNNVAGSSL 120 IPASDHGGGR GTDWQNWADQ LMSVDDTIDP NWNDIMADVD VPTLDTTKQM QIIPRPQVPS 180 IEVCPVSSPS SNGASSSIKP RMRWTPELHE SFVEAVNQLG GSERATPKGV LKLMNIESLT 240 IYHVKSHLQK YRTARYKPEL SEGTSDKKAT SIDEMVAMDI KNKSLGFTDA LKLQMEVQKQ 300 LHEQLEIQRN LQLRIEEQGK YLQMMFEQQR KMENGRLKPS SSNQDEEDDP ATEKQKASKN 360 DDRCEKSKEK SNSQIEVPEV NKSNMESGCS PRPSKRARPD EASMA

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDITPVCLKQ SGEKQLNDHM GVSRAMSSSN PVIPGFEGKY KKISDSIINT NTLFPDQNQI  60
VVSADTMSSF QTSNFVNSQS MSLIGYTSQT DDISWTAESL KDLIDFPENV AGNNVAGSSL  120
IPASDHGGGR GTDWQNWADQ LMSVDDTIDP NWNDIMADVD VPTLDTTKQM QIIPRPQVPS  180
IEVCPVSSPS SNGASSSIKP RMRWTPELHE SFVEAVNQLG GSERATPKGV LKLMNIESLT  240
IYHVKSHLQK YRTARYKPEL SEGTSDKKAT SIDEMVAMDI KNKSLGFTDA LKLQMEVQKQ  300
LHEQLEIQRN LQLRIEEQGK YLQMMFEQQR KMENGRLKPS SSNQDEEDDP ATEKQKASKN  360
DDRCEKSKEK SNSQIEVPEV NKSNMESGCS PRPSKRARPD EASMA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-31	199	257	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-31	199	257	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-31	199	257	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-31	199	257	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-31	199	257	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-31	199	257	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-31	199	257	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-31	199	257	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023755413.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBL	A0A2J6LWU6	0.0	A0A2J6LWU6_LACSA; Uncharacterized protein
STRING	cassava4.1_007430m	1e-104	(Manihot esculenta)